PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo25G0017500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 441aa    MW: 47449.6 Da    PI: 6.6194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo25G0017500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.75.1e-09271319355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Spipo25G0017500 271 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 319
                      58*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-17266337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-11266323No hitNo description
PROSITE profilePS5088815.485268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16269334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-6271319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10274324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDSGQKDRGD DRLSYHGSDI HGDWRFSGPQ MSFFGPPAVP EGDQICYSSS SSAMAAPFGR  60
RLWETAANSQ SPALPPPALD MAWNPPAAMP DSAGALFSRN GNGIFLHGLP QFPADPPFVE  120
RASRPSSFNG FAAGGMGSPS SGPGMVISGA HSQRSNPTPG RAPPKNDDRH DLELRAGGHQ  180
EENPSSETTA GDPSSAGSLP RKRKRGNQEA GLEPEQAMGD AQRSAEAPKE SHENKMADER  240
KNSSSEHGKD SAEPPKEDYV HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCSK  300
VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPHVDFNI EGLFLKEILQ SQSVPMPSIG  360
FPPEIGPPQL HPGQSSLVQP GIPRTGNPSE ALRRAINAQL AAVSSYGEPP NQIPSAWADE  420
LHNIQIGAHD FHGGHLKTER *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943352.11e-108PREDICTED: transcription factor bHLH49 isoform X1
TrEMBLF6HGF51e-105F6HGF5_VITVI; Putative uncharacterized protein
TrEMBLV4ST891e-104V4ST89_9R
STRINGVIT_01s0010g00740.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.37e-72bHLH family protein